Samples were extracted and run in single well qPCR reactions due to the large sample

numbers, high cost of testing, and previous work by the author’s group showing that triplicate wells give almost identical results (46). Serum samples collected at −7, −14, −21, 0, 7, 14, and 21 dpc were tested for the presence of PCV1-2 DNA and samples collected at 0, 7, 14, and 21 dpc were tested for the presence of PCV2 DNA by quantitative real-time PCR assays using primer-probe combinations as described previously (46) with the following modifications: a commercially available master mix (TaqMan Fast Universal PCR Master Mix, Applied Biosystems) was used, the reaction volume was 25 μL, only one aliquot was tested for each sample and the thermal selleck chemicals llc cycler conditions were 95°C for 2 min, followed by 40 cycles of 95°C for 10 s and 60°C for 1 min. Samples were considered negative when no signal was observed within the 40 amplification cycles. Five serial dilutions of a PCV2 genomic DNA clone (105 to 109 copies/mL) were used to generate a standard curve with a correlation coefficient of > 0.99 (46). Serum samples collected at 7, 14 and 21 dpc were tested

for the presence and amount of PRRSV RNA as described previously Crizotinib clinical trial (41). Samples were considered negative when no signal was Adenosine triphosphate observed within the 40 amplification cycles. All pigs were humanely euthanized by intravenous pentobarbital sodium overdose (Fatal-Plus, Vortech Pharmaceuticals, Dearborn, MI, USA) and necropsied at 21 dpc. The extent of macroscopic lung lesions (ranging from 0 to 100%) was estimated and scored as described previously (44). The sizes of superficial inguinal lymph nodes were compared among groups

as described previously (47). Sections of lymph nodes (superficial inguinal, external iliac, mediastinal, tracheobronchial, and mesenteric), tonsil, heart, thymus, kidney, colon, spleen, liver, small (ileum) and large intestine (spiral colon) were collected at necropsy, fixed in 10% neutral-buffered formalin, and routinely processed for histological examination. Microscopic lesions were evaluated by two veterinary pathologists (TO, PGH) who were blinded to the treatment groups. Lung sections were scored for the presence and severity of interstitial pneumonia, ranging from 0 (normal) to 6 (severe diffuse) (44). Sections of heart, liver, kidney, ileum, colon and thymus were evaluated for the presence of granulomatous inflammation and scored from 0 (none) to 3 (severe). Lymph nodes, spleen, and tonsil were evaluated based on LD and HR of follicles, ranging from 0 (normal) to 3 (severe) (22).