Although roots and mycorrhizal fungi influence soil structure through their activity ( Tisdall and Oades, 1982, Angers and Caron, 1998, Czarnes et al., 2000 and Read et al., 2003), the relative importance of bacterial and saprotrophic fungal diversity in the development and maintenance of soil structure, has yet to be fully explored. Sandy loam soil (Dunnington Heath series) Bioactive Compound Library cell assay was collected from 5 to 20 cm depth from the University of Nottingham farm site at Sutton Bonington, Leicestershire, UK (SK 512 267). The soil had the following physical characteristics: Sand 66%, silt 18%, clay 16%, organic matter 3.7% and pH 7.35. Soil was air dried and sieved to
<2 mm before γ-irradiating at 25 kGy (Isotron Ltd, Daventry, UK). Sterilised soil was packed into macrocosms (7.4 cm
internal diameter, 15.5 cm high, with a 400 μm mesh base) to a bulk density of 1.1 g cm−3. Mycorrhizal treatments were inoculated with 6 g of crude arbuscular mycorrhizal fungal (AMF) inoculum consisting of root material, spores and an expanded clay carrier placed 5 cm beneath the soil surface. The inoculum was added as a layer rather than mixed homogeneously into the potting soil primarily to prevent it from directly affecting the structure of the soil and to allow it to be readily identified when the columns were imaged. Further, seedling roots had to penetrate the layer and this maximised initial BLZ945 chemical structure contact with the inoculum. The inoculum contained five different Glomus species in combination (G. intraradices, G. microagregatum, G. mosseae, G. geosporum and G. claroides) (PlantWorks Ltd, Sittingbourne, Kent, UK). Non-mycorrhizal (NM) treatments consisted of sterilised inoculum and sieved unsterilised washings. Columns were inoculated
with indigenous micro-organisms originating from the fresh field soil, applied as one of two dilutions ( Salonius, 1981 and Griffiths et al., 2001). Soil was serially diluted in sterile Ringer’s solution ( Dickinson Glutamate dehydrogenase et al. 1975) starting from a 10−1 (1:10) dilution up to 10−6. Half the columns received the 10−1 dilution and the other half were treated with the 10−6 dilution; columns were initially saturated with the appropriate solution and then drained to field capacity. The experimental design was a factorial setup with further treatments superimposed onto each dilution amendment as follows: (i) bare soil, (ii) planted with P. lanceolata pre-germinated seedlings (at 1 true-leaf stage) + sterilised mycorrhizal inoculum, (iii) planted with P. lanceolata seedlings + live mycorrhizal inoculum. Two replicate columns were used for repeated non-destructive assessment of soil structure at 1, 3, 5 and 7 months from transplanting seedlings, using X-ray CT.